I'm not sure how I should set up a controller to work with my project.

Is that supposed to happen automatically, because its not. I exported my project to Android, and tried to use a controller made for androids (a Moga controller), but I can't control my character at all. Any tips or some instruction that I've missed?
 
By default the controller uses the Unity input manager which doesn't work very well with unknown controllers. You should use the Rewired or Input System integration to support a wide variety of controllers.
 
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